CLC Gene Workbench 2.2 review

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This 2 x 2 weeks of fully functional demo of CLC Gene Workbench 2 provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.

License: Demo
OS: Mac OS X
File size: 57764K
Developer: CLC bio
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Price: $80.00
Updated: 19 Dec 2006
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This 2 x 2 weeks of fully functional demo of CLC Gene Workbench 2 provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.

CLC Gene Workbench creates a software environment enabling users to make a large number of advanced DNA sequence analyses, combined with smooth data management, and excellent graphical viewing and output options.

CLC Gene Workbench is available on Windows, Mac OS X, and Linux platforms.

Here are some key features of "CLC Gene Workbench":
Some analyses are
Assembly of DNA sequencing data
Graphically and algorithmically advanced primer design
Molecular cloning
Automatic SNP annotation of sequences
types of alignments
Phylogenetics
Motif search (known patterns)
Pattern discovery (unknown patterns)
BLAST
Batch processing of multiple analyses in one work-step
Dot plots
Hydrophobicity analyses
Searches on GenBank and PubMed
Detailed log of actions/analyses performed.

Here are some key features of "CLC Gene Workbench":
Editor for graphically and algorithmically advanced primer design
Assembly of DNA sequence data
Molecular cloning
Automatic SNP annotation of sequences
Local complexity region analyses
Reverse translation from protein to gene, based on translation tables from a number of species
Advanced restriction enzyme analysis and management
Dot plot based analyses
DNA statistics report including a number of characteristics of a given molecule
NCBI sequence data search
Access to web info from PubMed
Search for sequence matches
Motif search for basic patterns
Motif search using regular expressions
Motif search with ProSite patterns
Pattern discovery (unknown patterns)
Web based sequence search using BLAST
BLAST on local databases
Build local BLAST databases
GenBank Entrez searches
UniProt searches (SwissProt/TrEMBL)
PubMed lookup
Web based lookup in UniProt, NCBI, and Google
SNP annotation using BLAST
Full integration of data input, data management, calculation results, and data export
Detailed history log
All types of files can be saved in local projects, and launched from the program
Import and export of data in a large number of file formats
Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
DNA, RNA and protein sequence editor displaying both linear and circular molecules
Joining multiple sequences into one
Joining multiple alignments into one
DNA, RNA, and protein alignment editor
Interactive logo graphs along both DNA, RNA and Protein alignments
Batch processing of analyses on multiple sequences in one work-step
Advanced re-alignment and fix-point alignment option
Manual annotation of sequences
Dot plot based analyses
Local complexity region analyses and complexity plots
Gap fraction graphs
G/C content analysis and graphs
Advanced pairwise comparison

Limitations:
4-week fully functional demo.

Please note: All data created during the demo-period, is fully accessible from CLC Free Workbench after expiry of your demo-license.

CLC Gene Workbench 2.2 keywords