Genomorama 1.4 review
DownloadGenomorama - Multi-scale, Multi-genome, Multi-platform Visualization and Analysis.
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Genomorama - Multi-scale, Multi-genome, Multi-platform Visualization and Analysis.
Here are some key features of "Genomorama":
Fast, interactive genome visualization
PCR primer prediction
PCR amplicon prediction.
What's New:
Added a selection guide for picking nucleotide sequence to display and translate into amino acids.
Fixed bug that caused clipping rectange to overlap neighbooring genomes.
Fixed bug in sequence selection (a selection that ended on the last base of the genome caused an infinite loop!).
Added a new annotation key to the GBK file parser -- "signature".
Fixed bug when inverting genome plot.
Fixed bug when parsing genome files with no genomes.
Fixed bug when clipping multiple genomes.
No longer throw an error when the GIF color table is exhausted -- use the closest color available instead.
Added the ability to import genome annotations from Protein Translation Table (ptt) files.
Fixed a bug in exact match DNA searching.
Added the ability to import annotations from any genome file that contains annotation (i.e. asn, gbk, embl, ptt). As with loading files, the file type is autodetected!
Fixed a import bug in the GBK file format (assigning GI values)
Added a horizontal scroll bar for scrolling all genomes left and right
Added a vertical scroll bar for zooming all genomes
Added the ability to export genome data (i.e. sequence and annotation) to the following formats: Fasta (protein and DNA), PTT and GBK
Fixed line numbers on GBK parse error messages.
Fixed lack of intergenic space for certain annotation combinations.
Fixed bug in the translation guide rendering (that could cause infinite loop under certain conditions).
Pressing the esc key now cancels any pending translation.
Added the ability to load multiple genomes from a single ASN file.
Fixed the rendering of *multiple* annotations that all overlap the origin.
Added search by genome name.
Modifed the EMBL parser to handle Artemis files.
Fixed bug in searching for Padlock/MOL-PCR probes
Added an annotation editor
Genomorama 1.4 search tags