Linux science and engineering › bioinformatics software reviews

  • ploticus 2.33
    ploticus is a free, GPL, non-interactive software package for producing plots, charts, and graphics from data
  • Ghemical 2.01
    Ghemical is a computational chemistry software package released under the GNU GPL
  • Jmol 10.9.105
    Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry
  • E-Cell System 3.1.105
    E-Cell System is a concept of constructing virtual cells on computers. E-Cell System is an object-oriented software suite for mode
  • JOELib/JOELib2 2006-07-25
  • Bioperl 1.5.2
    Bioperl project is a collection of perl modules that facilitate the development of perl scripts for bioinformatics applications
  • WEKA 3.5.3
    Weka project is a collection of machine learning algorithms for data mining tasks
  • BioJava 1.30
    BioJava is an open-source project dedicated to providing a Java framework for processing biological data
  • Isotopic Pattern Calculator 1.4
    IPC is a program that calculates the isotopic distribution of a given chemical formula
  • Bioinformatics Benchmark System 3
    The Bioinformatics Benchmark System is an attempt to build a reasonable testing framework, tests, and data, to enable end users and v
  • PDBCat 1.3
    PDBCat can be used to manipulate and process PDB files using commonly available tools such as Perl, awk, etc. Written by Andrew Da
  • NSCL SpecTcl 3.1-pre3
    SpecTcl (pronounced Spectacle) is a powerful nuclear event data analysis too
  • Geant4 8.1p1
  • pyNetConv 0.12
    pyNetConv is a Python library created to help the conversion of some network file formats. Since version 0.6, pyNetConv is capable
  • PerlPrimer 1.1.14
    PerlPrimer is a free, open-source GUI application written in Perl that designs primers for standard PCR, bisulphite PCR, real-time PC
  • CoaSim 4.1.0
    CoaSim is a tool for simulating the coalescent process with recombination and geneconversion under various demographic models. CoaSi
  • BALLView 1. Beta 2
  • Mauve 1.3.0
    Mauve project is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events
  • THCcalc 1.2.1
    THCcalc program was originally written for Un*x-type systems
  • Array Designer 4.11
    Array Designer project can help design thousands of efficient, highly specific oligos to make microarrays for SNP genotyping and expr
  • SIBsim4 0.14
    SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing fo
  • Single Marker Association 2.0
    Single Marker Association is a simple tool that calculates the single marker association between individual SNP markers and a case/co
  • Plasmidb 0.6
    Plasmidb project is a interface to a simple MySQL database, which itself contains information about projects in molecular biology.
  • Geneious 2.5.3
    Geneious project is a unique, easy to use software system that greatly speeds up and simplifies research in molecular biology and bio
  • Python Macromolecular Library 0.98
    Python Macromolecular Library (mmLib) is a software toolkit and library of routines for the analysis and manipulation of macromolecul

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