Linux science and engineering › bioinformatics software reviews
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ploticus 2.33
ploticus is a free, GPL, non-interactive software package for producing plots, charts, and graphics from data
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Ghemical 2.01
Ghemical is a computational chemistry software package released under the GNU GPL
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Jmol 10.9.105
Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry
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E-Cell System 3.1.105
E-Cell System is a concept of constructing virtual cells on computers.
E-Cell System is an object-oriented software suite for mode
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JOELib/JOELib2 2006-07-25
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Bioperl 1.5.2
Bioperl project is a collection of perl modules that facilitate the development of perl scripts for bioinformatics applications
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WEKA 3.5.3
Weka project is a collection of machine learning algorithms for data mining tasks
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BioJava 1.30
BioJava is an open-source project dedicated to providing a Java framework for processing biological data
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Isotopic Pattern Calculator 1.4
IPC is a program that calculates the isotopic distribution of a given chemical formula
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Bioinformatics Benchmark System 3
The Bioinformatics Benchmark System is an attempt to build a reasonable testing framework, tests, and data, to enable end users and v
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PDBCat 1.3
PDBCat can be used to manipulate and process PDB files using commonly available tools such as Perl, awk, etc.
Written by Andrew Da
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NSCL SpecTcl 3.1-pre3
SpecTcl (pronounced Spectacle) is a powerful nuclear event data analysis too
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Geant4 8.1p1
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pyNetConv 0.12
pyNetConv is a Python library created to help the conversion of some network file formats.
Since version 0.6, pyNetConv is capable
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PerlPrimer 1.1.14
PerlPrimer is a free, open-source GUI application written in Perl that designs primers for standard PCR, bisulphite PCR, real-time PC
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CoaSim 4.1.0
CoaSim is a tool for simulating the coalescent process with recombination and geneconversion under various demographic models.
CoaSi
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BALLView 1. Beta 2
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Mauve 1.3.0
Mauve project is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events
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THCcalc 1.2.1
THCcalc program was originally written for Un*x-type systems
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Array Designer 4.11
Array Designer project can help design thousands of efficient, highly specific oligos to make microarrays for SNP genotyping and expr
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SIBsim4 0.14
SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing fo
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Single Marker Association 2.0
Single Marker Association is a simple tool that calculates the single marker association between individual SNP markers and a case/co
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Plasmidb 0.6
Plasmidb project is a interface to a simple MySQL database, which itself contains information about projects in molecular biology.
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Geneious 2.5.3
Geneious project is a unique, easy to use software system that greatly speeds up and simplifies research in molecular biology and bio
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Python Macromolecular Library 0.98
Python Macromolecular Library (mmLib) is a software toolkit and library of routines for the analysis and manipulation of macromolecul